PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AMDW01085339.1_FGP001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 102aa    MW: 10951 Da    PI: 4.5226
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AMDW01085339.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM354.1e-1148102148
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLp 48 
                            +p+G+rF+Ptd+el+ e+L++kv++        ++++ + i+   +i++++P++Lp
  AMDW01085339.1_FGP001  48 MPAGVRFDPTDQELI-EHLEAKVKDGGstshplIDEFIHtIQGEdGICYTHPENLP 102
                            699************.99******9987777664443344777756********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-1039102IPR003441NAC domain
PROSITE profilePS5100512.77348102IPR003441NAC domain
PfamPF023651.4E-44978IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MSSDGASGST GMKQDDGDHR PITGASSRRC PSCGHDPDCN KPFDMVGMPA GVRFDPTDQE  60
LIEHLEAKVK DGGSTSHPLI DEFIHTIQGE DGICYTHPEN LP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2422271e-157AK242227.1 Oryza sativa Japonica Group cDNA, clone: J075175B09, full insert sequence.
GenBankJQ0880961e-157JQ088096.1 Oryza sativa Japonica Group NAC transcription factor 85 (NAC85) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637950.15e-68PREDICTED: NAC domain-containing protein 73 isoform X2
SwissprotO494592e-28NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A0D3G4641e-69A0A0D3G464_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0PIK82e-69A0A0E0PIK8_ORYRU; Uncharacterized protein
TrEMBLA0A0E0PIK93e-69A0A0E0PIK9_ORYRU; Uncharacterized protein
STRINGBGIOSGA018654-PA4e-68(Oryza sativa Indica Group)
STRINGORGLA05G0055000.11e-68(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP174251011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.12e-33NAC domain containing protein 75